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PhenX Publications - (28) (updated June 29, 2018)


Kaufman, A.R., Persoskie, A., Twesten, J.,Bromberg, J. (2018) A review of risk perception measurement in tobacco control research. Tobacco Control Advance online publication: 06 February 2018. doi: 10.1136/tobaccocontrol-2017-054005

Garcia-Cazarin, M.L., Mandal, R.J., Grana, R., Wanke, K.L., Meissner, H. (2018) Host–agent–vector–environment measures for electronic cigarette research used in NIH grants. Tobacco Control Advance online publication: 13 January 2018.doi: 10.1136/tobaccocontrol-2017-054032


Eckman, J.R., Hassell, K.L., Huggins, W., Werner, E.M., Klings, E.S., Adams, R.J.,Panepinto, J.A., Hamilton, C.M. (2017) Standard measures for sickle cell disease research: the PhenX Toolkit sickle cell disease collections. Blood Advances. 2017 (1),2703-2711. doi:

Malinowski, A.K., Ananth, C.V., Catalano, P., Hines, E.P., Kirby, R.S., Klebanoff, M.A., . . . Dolan, S.M. (2017) Research standardization tools: Pregnancy measures in the PhenX Toolkit. American Journal of Obstetrics & Gynecology. 2017 May 31. pii: S0002-9378(17)30687-7. doi: 10.1016/j.ajog.2017.05.058. [Epub ahead of print]. PMID: 28578176

Phillips, M., Grant, T., Giampietro, P., Bodurtha, J., Valdez, R., Maiese, D.R., Hendershot, T., Terry, S.F., Hamilton, C.M. (2017) PhenX measures for phenotyping rare genetic conditions. Genet Med. Jul;19(7):834-837. doi:10.1038/gim.2016.199


Dixon, L. (2016) What it will take to make coordinated specialty care available to anyone experiencing early schizophrenia: Getting over the hump. JAMA Psychiatry, 2017;74(1):7-8. doi:10.1001/jamapsychiatry.2016.2665

Mulder, N., Nembaware, V., Adekile, A., Anie, K. A., Inusa, B., Brown, B.,. . .Wonkam, A. (2016). Proceedings of a Sickle Cell Disease Ontology workshop — Towards the first comprehensive ontology for Sickle Cell Disease. Applied and Translational Genomics, 9, 23-29. DOI: 10.1016/j.atg.2016.03.005

Barch, D.M., Gotlib, I.A., Bilder, R.M., Pine, D.S., Smoller, J.W., Brown, C.H, Huggins, W., Hamilton, C.M., Haim, A., and Farber, G.K. (2016) Common Measures for National Institute of Mental Health Funded Research, Biological Psychiatry,


Hendershot, T., Pan, H., Haines, J., Harlan, W.R., Marazita, M.L., McCarty, C.A., Ramos, E.M., and Hamilton, C.M. (2015) Using the PhenX toolkit to add standard measures to a study. Curr. Protoc. Hum. Genet. 86:1.21.1-1.21.17. doi: 10.1002/0471142905.hg0121s86


Conway, K.P., Vullo, G.C., Kennedy, A.P., Finger, M.S., Arpana, A., Bjork, J.M., Farrer, L.A., Hancock, D.B., Hussong, A., Wakim, P., Huggins, W., Hendershot, T., Nettles, D.S., Pratt, J., Maiese D., Junkins, H.A., Ramos, E.M., Strader, L.C., Hamilton, C.M., Sher, K.J. (2014) Data compatibility in the addiction sciences: An examination of measure commonality. Drug and Alcohol Dependence,

Hitz, M.M., Conway, P.G, Palcher, J.A., McCarty, C.A. (2014) Using PhenX toolkit measures and other tools to assess urban/rural differences in health behaviors: recruitment methods and outcomes. BMC Research Notes. 7(847) Published online 26 November 2014. doi: 10.1186/1756-0500-7-847

McCarty, C.A., Huggins, W., Aiello, A.E., Bilder, R.M., Hariri, A., Jernigan, T.L., Newman, E., Sanghera, D.K., Strauman, T.J., Zeng, Y., Ramos, E.M., Junkins, H.A. (2014) PhenX RISING: real world implementation and sharing of PhenX measures. BMC Medical Genomics, 7(16), doi: 10.1186/1755-8794-7-16

McCarty, C.A., Berg, R., Rottscheit, C.M., Waudby, C.J., Kitchner, T., Brilliant, M., Ritchie, M.D. (2014) Validation of PhenX measures in the personalized medicine research project for use in gene/environment studies. BMC Medical Genomics, 7(3), doi:10.1186/1755-8794-7-3


Maiese, D.R., Hendershot, T.P., Strader, L.C., Wagener, D.K., Hammond, J.A., Huggins, W., Kwok, R.K., Hancock, D.B., Whitehead, N.S., Nettles, D.S., Pratt, J.G., Scott, M.S., Conway, K.P., Junkins, H.A., Ramos, E.M., Hamilton, C.M.(2013) PhenX - Establishing a consensus process to select common measures for collaborative research. (RTI Press publication No. MR-0027-1310). Research Triangle Park, NC: RTI Press.

Oetting, W.S., Robinson, P.N., Greenblatt, M.S., Cotton, R.G., Beck, T., Carey, J.C., Doelken, S.C., Girdea, M., Groza, T., Hamilton C.M., Hamosh, A., Kerner, B., Macarthur, J.A., Maglott, D.R., Mons, B., Rehm, H.L., Schofield, P.N., Searle, B.A., Smedley, D., Smith, C.L., Bernsetin, I.T., Zankl A., & Zhao, E.Y. (2013) Getting Ready for the Human Phenome Project: The 2012 Forum of the Human Variome Project. Human Mutation, 34(4), 661-6. doi: 10.1002/humu.22293


Whitehead, N., Hammond, J. A., Williams, M., Huggins, W., Hoover, S., Hamilton, C. M., Ramos, E., Junkins, H., Harlan, W., Hogue, C. & PhenX Reproductive Health Working Group (2012) The PhenX Toolkit Pregnancy and Birth Collections. Annals of Epidemiology,

Haskell, W.L., Troiano, R.P., Hammond, J.A., Phillips, M.J., Strader, L.C., Marquez, D.X., Grant, S.F.A., & Ramos, E. (2012) Physical Activity and Physical Fitness: Standardizing Assessment with the PhenX Toolkit. American Journal of Preventive Medicine, 42(5), 486-92.

Pan, H., Tryka, K., Vreeman, D., Huggins, W., Phillips, M., Mehta, J., Phillips, J., McDonald, C., Junkins, H., Ramos, E. & Hamilton, C. M. (2012) Using PhenX Measures to Identify Opportunities for Cross-Study Analysis. Human Mutation, 33(5), 849-857.

Ritchie, M.D. (2012)The success of pharmacogenomics in moving genetic association studies from bench to bedside: study design and implementation of precision medicine in the post-GWAS era.Human Genetics, 131, 10, 1615

Braun, T. R., Been, L. F., Blackett, P. R. & Sanghera, D. K. (2012) Vitamin D Deficiency and Cardio-Metabolic Risk in a North Indian Community with Highly Prevalent Type 2 Diabetes. Journal of Diabetes & Metabolism 3: 213. doi:10.4172/21556156.1000213

Pendergrass, S. A., Verma, S. S., Holzinger, E. R., Moore, C. B., Wallace, J., Dudek, S. M., Huggins, W., Kitchner, T., Waudby, C., Berg, R., McCarty, C. A. & Ritchie M. D. (2012) Next-Generation Analysis of Cataracts: Determining Knowledge Driven Gene-Gene Interactions Using Biofilter, and Gene-Environment Interactions Using the PhenX Toolkit. Pacific Symposium on Biocomputing 18:147-158(2013).


Hendershot, T., Pan, H., Haines, J., Harlan, W., Junkins, H., Ramos, E., & Hamilton, C. M. (2011) Using the PhenX Toolkit to Add Standard Measures to Your Study. Current Protocols in Human Genetics, Chapter 1, Unit 1.21.

Hamilton, C. M., Strader, L. C., Pratt, J., Maiese, D., Hendershot, T., Kwok, R., Hammond, J., Huggins, W., Jackman, D., Pan, H., Nettles, D., Beaty, T., Farrer, L., Kraft, P., Marazita, M., Ordovas, J., Pato, C., Spitz, M., Wagener, D., Williams, M., Junkins, H., Harlan, W., Ramos, E. & Haines, J. (2011) The PhenX Toolkit: Get the Most From Your Measures. American Journal of Epidemiology, 174(3), 253-60.

Hamilton, C. M., Strader, L. C., Pratt, J., Maiese, D., Hendershot, T., Kwok, R., Hammond, J., Huggins, W., Jackman, D., Pan, H., Nettles, D., Beaty, T., Farrer, L., Kraft, P., Marazita, M., Ordovas, J., Pato, C., Spitz, M., Wagener, D., Williams, M., Junkins, H., Harlan, W., Ramos, E & Haines, J. (2011) Response to Invited Commentary: Consolidating Data Harmonization. American Journal of Epidemiology, 174(3), 265-266.

Pathak J., Pan H., Wang, J., Kashyap, S., Schad, P., Hamilton, C. M., Masys, D. & Chute, C. (2011) Evaluating Phenotypic Data Elements for Genetics and Epidemiological Research: Experiences from the eMERGE and PhenX Network Projects. American Medical Informatics Association (AMIA) Clinical Research Informatics (CRI) Summit Proceedings, 2011, 41-45.

Schad, P. A., L. R. Mobley & Hamilton, C. M. (2011) Building a biomedical cyberinfrastructure for collaborative research. American Journal of Preventive Medicine, 40(5 Suppl 2), S144-150.


Fortier, M., Burton, P.R., Robson, P.J., Ferretti,V., Little, J., L’Heureux, F., . . . Hudson, T.J. (2010) Quality, quantity and harmony: the DataSHaPER approach to integrating data across bioclinical studies. International Journal of Epidemiology. 2010 Oct; 39(5): 1383–1393. Published online 2010 Sep 2. doi: 10.1093/ije/dyq139

Stover, P. J., Harlan, W., Hammond, J., Hendershot, T., & Hamilton, C. M. (2010) An interdisciplinary toolkit for genetics and epidemiology. Current Opinion in Lipidology, 21, 136-140.

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